Publications listed in chronological order:

Cox, TE; Boyle, KS; Albins, M; Powers, S; Cebrian, J (2025) Carbon production at shallow-water artificial reef ecosystems relies on water column primary productivity. Limnology & Oceanography.  9999: 1-18 https://doi: 10.1002/lno.70008

Harsha, M; Salas-Ortiza, Y; Cypher, AD; Osborn, ED; Turcios Valle, E; Gregg, JL;  Hershberger, PK; Kurerov,Y;  King, S;  Goranov, AI; Hatcher, PG; Konefal, A;  Cox, TE;  Greer, JB; Meador, JP; Tarr, MT;  Tomco, PL; Podgorski, DC. (in press) Toxicity of crude oil-derived polar unresolved complex mixtures to Pacific herring embryos: Insights beyond polycyclic aromatic hydrocarbons. Science of the Total Environment
 
Lowell, A; Hill, C; Dupont, S; Infantes, E; Ramesh, K; Peterson, B; Govers, LL; Cox, TE (2024) Low pH enhances germination of eelgrass (Zostera marina L.) seeds despite ubiquitous presence of Phytophthora gemini. Aquatic Botany 95:103805 https://doi.org/10.1016/j.aquabot.2024.103805
 
Konefal, A.; Kirkland, A; Gilipin, R; Wyssmann, K; Anthony, N; Cebrian, J; Cox, TE (2024) The relationship between genetic diversity, function, and stability in marine foundation species. BioScience 74: 187-206 https://doi.org/10.1093/biosci/biad123
 
Ward, R; Cox, TE; Colbert, S; Faucci, A; La Valle, F; Philippoff, J; Schaefer, J; Wiegner, T; Ware, I; Knope, M (2023) Spatial variation and antecedent sea surface temperature conditions influence Hawaiian intertidal community structure. PloS one, 18: e0286136
 
Lowell, A; Infantes, E; West, L; Puishys, L; Hill, C; Ramesh, K; Peterson, P; Cebrian, J; Dupont, S; and Cox, TE (2021) How does ocean acidification affect the early life history of Zostera marina? A series of experiments find parental carryover can benefit viability or germination. Frontiers in Marine Science 8: 762806 https://doi.org/10.3389/fmars.2021.762086

Cox, TE; Cebrían, J; Tabor, M; West, L; and Krause, JW (2020) Do diatoms dominate benthic production in shallow systems? A case study from a mixed seagrass bed. Limnology and Oceanography Letters 5:425-434 doi: 10.1002/lol2.10167
 
La Valle, F; Schaefer, J; Cox, TE; and Philippoff, J (2020) Longitudinal assessment of Hawaii’s intertidal algal communities. Hydrobiologia 847: 3321–3336  doi:10.1007/s10750-020-04336-5
 
Guerrero-Meseguer, L; Cox, TE; Sanz-Lázaro, C; Schmid, S; Enzor, LA; Major, K; Gazeau, F; and Cebrían, J (2020). Does ocean acidification benefit seagrasses in a mesohaline environment? A mesocosm experiment in the Northern Gulf of Mexico. Estuaries & Coasts https://doi.org/10.1007/s12237-020-00720-5

Díaz-Castañeda, V; Cox, TE; Gazeau, F; Delille, J; Alliouane, S.; and Gattuso, J-P (2019) Ocean acidification affects calcareous tube growth in adult stage and reared offspring of serpulid polychaetes. Journal of Experimental Biology (shared first authorship) 222: jeb196543 doi:10.1242/jeb.196543
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Starck, J.; Barry, J; Cox, TE; Gazeau, F; Kline, D; Kirkwood, W; Quieros, A; Runcie, J; Widdcombe, S; Gattuso, J-P (2019) Free Ocean CO2 Enrichment (FOCE) experiments: technical and scientific advice for successful projects. Progress in Oceanography 172: 19-107 doi: 10.1016/j.pocean.2019.01.006

Foster, A; Spalding, H; Cox, TE; Valle F; Philippoff, J (2018) The invasive green alga Avrainvillea sp. transforms native epifauna and algal communities on a hard-bottom reef. Phycological Research 1-6 doi: 10.1111/pre.12359
 
Cox, TE; Díaz-Castañeda, V; Alliouane, S; Mahacek, P; Le Fur, A; Gattuso, J-P and Gazeau, F (2017) Effects of in situ CO2 enrichment on epibiont settlement on artificial substrata within a Posidonia oceanica meadow. Journal of Experimental Marine Biology and Ecology. 497: 197-211 https://doi.org/10.1016/j.jembe.2017.10.003
 
Cox, TE; Nash, M; Gazeau, F; Deniel, M; Legrande, E; Alliouane, S; Mahacek, P; Le Fur, A; Gattuso J- P, Martin, S (2017) Effects of in situ CO2 enrichment on Posidonia oceanica epiphytic community composition and mineralogy. Marine Biology 164: 103 doi:10.1007/s00227-017-3136-7
 
Cox, TE; Spalding, H; and Foster, MS (2017) Spatial and temporal variation of diverse intertidal algal assemblages in southwest Oahu. Marine Ecology 8:e12429 https://doi.org/10.1111/maec.12429
 
Cox, TE; Gazeau, F; Alliouane, S; Hendriks, I; Mahacek, P; Le Fur, A; and Gattuso, J-P (2016) Effects of in situ CO2 enrichment on structural characteristics, photosynthesis, and growth of the Mediterranean seagrass Posidonia oceanica. Biogeosciences 13: 2179 – 2194
doi:10.5194/bg-13-2179 2016
 
Cox, TE; Schenone, S; Delille, J; Díaz-Castañeda, V; Alliouane, S; Gattuso, J-P; Gazeau, F (2015) Effects of ocean acidification on Posidonia oceanica epiphytic community and shoot productivity. Journal of Ecology 103: 1594 - 1609 doi: 10.1111/1365-2745.12477
 
Gazeau, F; Urbini, L; Cox, TE; Alliouane, S; and Gattuso, J-P (2015) Comparison of the alkalinity and calcium anomaly techniques to estimate rates of net calcification. Marine Ecology Progress Series 527: 1-12, Feature Article doi: 10.3354/meps11287
 
Cox, TE and Smith CM (2015) Photosynthetic rapid light curves for Padina sanctae-crucis vary with irradiance, aerial exposure, and tides in Hawaii's micro-intertidal zones. Marine Biology 162: 1061- 1076 doi: 10.1007/s00227-015-2649-1
 
Gattuso, J-P; Kirkwood, W; Barry, JP; Cox, TE; Gazeau, F; Hansson, L; Hendriks, I; Kline, D; Mahacek, P; Martin, S; McElhany, P; Reeve, J; Roberts, D; Saderne, V; Tait, K; Widdicombe, S; and Brewer, PG (2014) Free-ocean CO2 enrichment (FOCE) systems: present status and future developments Biogeosciences 11: 4057–4075 doi:10.5194/bg-11-4057-2014
 
Cox, TE; Smith, CM; Popp, B; Foster, MS; and Abbott, IA (2013) Can stormwater be detected by marine algae? Marine Pollution Bulletin 71: 92-100 http://dx.doi.org/10.1016/j.marpolbul.2013.03.030
 
Cox, TE and Foster, MS (2013) The effects of storm-drains with periodic flows on intertidal algal communities in ‘Ewa Beach (O‘ahu), Hawai‘i. Marine Pollution Bulletin 70: 162-170 http://dx.doi.org/10.1016/j.marpolbul.2013.02.029
 
Cox, TE; Philippoff, J; Baumgartner, E; Zabin, C; and Smith, CM (2013) Spatial and temporal patterns of rocky intertidal communities along the Main Islands of Hawai‘i. Pacific Science 67:23-45, with cover photo http://dx.doi.org/10.2984/67.1.3
 
Cox, TE; Philippoff, J; Baumgartner, E; and Smith, CM (2012) Expert variability provides perspective on the strengths and weaknesses of a citizen-driven intertidal monitoring program. Ecological Applications 22: 1201-1212 PMID: 22827128
 
Cox, TE and Smith, CM (2011) Thermal ecology on an exposed algal reef: infrared imagery a rapid tool to survey temperature at local spatial scales. Coral Reefs 30:1109-1120
doi: 10.1007/s00338-011-0799-2
 
Cox, TE, Baumgartner, E; Philippoff, J ; and Boyle, K (2011) Spatial and vertical patterns in the tidepool fish assemblage on the island of Oahu. Environmental Biology of Fishes 90: 329-342 doi: 10.1007/s10641-010-9744-4
 
 Boyle, KS and Cox, TE (2009) Courtship and spawning sounds in bird wrasse Gomphosus varius and saddle wrasse Thalassoma duperrey. Journal of Fish Biology 75: 2670-2681 doi:10.1111/j.1095- 8649.2009.02459
 
Cox, TE and Murray, SN (2006) Feeding preferences and the relationships between food choice and assimilation efficiency in the herbivorous marine snail Lithopoma undosum (Turbinidae). Marine Biology 148:1295-1306 doi: 10.1007/s00227-005-0166-3